Only manually by changing all the objects which are not listed by changing the name of them.
For an easier tracking which one are not shown copy your existing installation into another folder and install there the dedicated server patch.
As the server start as text it show you probable errors.
Make a screenshot and later insert whith FMB the missing objects. After this delete manually all faulty entries with an texteditor.
Before you ask, no, I don't have time at the moment to do it, sorry.